ahhhhhhhhhh thats better.
"nicholas, remember after the oracle meeting, mr. smith said that after he and neo had the fight, they became a part of each other? how did that happen, we shall find out soon, but that's why he was able to "feel" those animal things that were created by the likes of mr. smith..."
i definately think your onto something, clearly from the trailer, agent smith is the centre of the next film.
He detonated the EMP device early, causing zion to get massacred but that wasnt in Colonel Sander's plan surely, it would have happened anyway.
Agent Smith must know about the Colo.. sorry the Architect's design and was trying to throw it off, not just mess up the humans.
BUT! Mr Smith didnt create the machines, and i dont think it was inferred that Neo got some of smith's abilities was it?
1) The Zion and all those evil machine thingys are a second matrix. Thats what Neo realises when he turns around and stops them. He doesnt go into a coma, he rejects the program and wakes up.
2) gimme a minute my head hurts